STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114651231E3 ubiquitin-protein ligase SIAH1-like. (275 aa)    
Predicted Functional Partners:
cacybp
Calcyclin binding protein.
    
 0.961
ctnnb1
Catenin beta 1.
    
 0.907
axin1
Axin 1.
    
 0.798
ube2n
Ubiquitin conjugating enzyme E2 N.
   
 0.796
axin2
Axin 2.
    
  0.788
ube2v2
Ubiquitin conjugating enzyme E2 V2.
    
   0.772
jup
Junction plakoglobin.
    
 0.750
csnk1a1
Casein kinase 1 alpha 1.
     
 0.741
snca
Synuclein alpha.
    
 0.718
tbl1xr1
Transducin beta like 1 X-linked receptor 1.
    
  0.709
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.