STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smpd1Sphingomyelin phosphodiesterase 1. (589 aa)    
Predicted Functional Partners:
asah1
N-acylsphingosine amidohydrolase 1.
   
 0.935
smpd2
Sphingomyelin phosphodiesterase 2.
     
 0.928
ugcg
UDP-glucose ceramide glucosyltransferase.
     
 0.905
smpd4
Sphingomyelin phosphodiesterase 4.
     
 0.899
sgms1
Sphingomyelin synthase 1.
     
 0.895
sgms2
Sphingomyelin synthase 2.
     
 0.895
gba
Glucosylceramidase beta.
   
 
 0.893
galc
Galactosylceramidase.
     
 0.893
LOC114645583
Neutral ceramidase-like.
     
 0.888
cerk
Ceramide kinase.
    
 0.887
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.