STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
calhm6Calcium homeostasis modulator family member 6. (320 aa)    
Predicted Functional Partners:
hand1
Heart and neural crest derivatives expressed 1.
      
 0.658
c14h1orf109
Chromosome 14 C1orf109 homolog.
   
    0.654
lman2l
Lectin, mannose binding 2 like.
      
 0.645
rubcnl
Rubicon like autophagy enhancer.
   
    0.639
ENSECRP00000031930
annotation not available
   
    0.632
phf20l1
PHD finger protein 20 like 1.
      
 0.630
vcl
Vinculin.
      
 0.623
mocs3
Molybdenum cofactor synthesis 3.
   
    0.572
fbxo47
F-box protein 47.
   
    0.517
lix1l
Limb and CNS expressed 1 like.
   
    0.500
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.