STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
noc3lNOC3 like DNA replication regulator. (797 aa)    
Predicted Functional Partners:
mak16
MAK16 homolog.
   
 0.999
brix1
Biogenesis of ribosomes BRX1.
   
 0.999
gtpbp4
GTP binding protein 4.
   
 0.999
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
   
 0.999
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 0.999
wdr12
WD repeat domain 12.
   
 0.999
mrto4
MRT4 homolog, ribosome maturation factor.
   
 0.999
ebna1bp2
EBNA1 binding protein 2.
   
 0.999
ddx18
DEAD-box helicase 18.
   
 0.999
rsl1d1
Ribosomal L1 domain containing 1.
   
 0.999
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.