STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps41VPS41 subunit of HOPS complex. (818 aa)    
Predicted Functional Partners:
vps11
VPS11 core subunit of CORVET and HOPS complexes.
   
 0.999
vps39
VPS39 subunit of HOPS complex.
   
 0.999
vps16
VPS16 core subunit of CORVET and HOPS complexes.
    
 0.999
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.999
tgfbrap1
Transforming growth factor beta receptor associated protein 1.
   
 0.998
stx17
Syntaxin 17.
    
 0.997
vps33b
VPS33B late endosome and lysosome associated.
    
 0.996
vps33a
VPS33A core subunit of CORVET and HOPS complexes.
    
 0.996
ap3d1
Adaptor related protein complex 3 subunit delta 1.
    
 0.990
tecpr2
Tectonin beta-propeller repeat containing 2.
    
   0.990
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.