STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c2h11orf58Chromosome 2 C11orf58 homolog. (172 aa)    
Predicted Functional Partners:
skp1
S-phase kinase associated protein 1.
   
    0.836
cdc123
Cell division cycle 123.
   
    0.718
sub1
SUB1 regulator of transcription.
   
    0.562
LOC114661560
Activated RNA polymerase II transcriptional coactivator p15-like.
   
    0.562
pcnp
PEST proteolytic signal containing nuclear protein.
   
    0.420
c4h2orf40
Chromosome 4 C2orf40 homolog.
      
 0.410
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.