STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000005558annotation not available (498 aa)    
Predicted Functional Partners:
LOC114652029
Histone PARylation factor 1.
    
 
 0.946
parp1
poly(ADP-ribose) polymerase 1.
  
0.930
casp9
Caspase 9.
    
 0.917
LOC114649895
Caspase-7-like.
    
 0.908
casp7
Caspase 7.
    
 0.908
LOC114648780
poly(ADP-ribose) glycohydrolase-like.
  
 
 0.893
cenpu
Centromere protein U.
    
 0.893
casp3
Caspase 3.
    
 0.893
ENSECRP00000024312
annotation not available
  
 
0.883
LOC114668791
Protein mono-ADP-ribosyltransferase PARP3-like.
  
 
0.880
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.