STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1146473962-oxoglutarate-dependent dioxygenase gloF-like. (312 aa)    
Predicted Functional Partners:
aasdh
Aminoadipate-semialdehyde dehydrogenase.
     
 0.920
atg9a
Autophagy related 9A.
     
 0.890
oat
Ornithine aminotransferase.
     
 0.854
aldh7a1
Aldehyde dehydrogenase 7 family member A1.
     
 0.820
ENSECRP00000014485
annotation not available
  
 0.795
rps17
Ribosomal protein S17.
  
 0.795
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.772
ENSECRP00000017025
annotation not available
    
 0.772
pdik1l
PDLIM1 interacting kinase 1 like.
    
 0.772
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.772
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.