STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msx1Msh homeobox 1. (283 aa)    
Predicted Functional Partners:
msx2
Msh homeobox 2.
  
0.930
LOC114647079
Homeobox protein MSH-C-like.
  
  
 
0.847
LOC114653358
Transthyretin-like.
   
 
 0.630
LOC114644603
5-hydroxyisourate hydrolase-like.
     
 0.618
LOC114660801
Non-structural maintenance of chromosomes element 3 homolog.
    
 
 0.575
LOC114653655
Cysteine/serine-rich nuclear protein 1-like.
      
 0.556
pax1
Paired box 1.
    
 
 0.513
pax9
Paired box 9.
    
 
 0.513
snai2
Snail family transcriptional repressor 2.
   
  
 0.506
lef1
Lymphoid enhancer binding factor 1.
   
  
 0.502
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.