STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114651842High mobility group protein 20A-like. (375 aa)    
Predicted Functional Partners:
kdm1a
Lysine demethylase 1A.
   
 0.872
phf21a
PHD finger protein 21A.
    
 0.831
hmg20b
High mobility group 20B.
    
 
0.809
gtf2h1
General transcription factor IIH subunit 1.
    
 0.786
actr8
Actin related protein 8.
    
 0.786
gtf2h3
General transcription factor IIH subunit 3.
    
 0.780
polrmt
RNA polymerase mitochondrial.
    
 0.757
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.743
ruvbl1
RuvB like AAA ATPase 1.
    
 0.731
phf14
PHD finger protein 14.
   
 
 0.729
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.