STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fastkd3FAST kinase domains 3. (656 aa)    
Predicted Functional Partners:
LOC114662354
Uncharacterized LOC114662354.
    
  0.723
dmgdh
Dimethylglycine dehydrogenase.
  
 0.700
ENSECRP00000009267
annotation not available
  
 0.700
sardh
Sarcosine dehydrogenase.
  
 0.700
amt
Aminomethyltransferase.
  
 0.700
phyh
phytanoyl-CoA 2-hydroxylase.
    
 0.664
phyhd1
phytanoyl-CoA dioxygenase domain containing 1.
    
 0.664
pipox
Pipecolic acid and sarcosine oxidase.
  
 
 0.636
ddo
D-aspartate oxidase.
  
 
 0.636
LOC114668908
D-amino-acid oxidase-like.
  
 
 0.636
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.