STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bbs7Bardet-Biedl syndrome 7. (715 aa)    
Predicted Functional Partners:
bbs1
Bardet-Biedl syndrome 1.
   
 0.998
bbs2
Bardet-Biedl syndrome 2.
  
 0.998
ttc8
Tetratricopeptide repeat domain 8.
  
 0.997
bbs4
Bardet-Biedl syndrome 4.
    
 0.996
ENSECRP00000009294
annotation not available
    
 0.991
bbs5
Bardet-Biedl syndrome 5.
   
 0.990
ENSECRP00000028328
annotation not available
    
 0.975
ENSECRP00000030458
annotation not available
    
 0.975
lztfl1
Leucine zipper transcription factor like 1.
    
 0.960
klhl40
Kelch like family member 40.
   
 0.946
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.