STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114646589Mothers against decapentaplegic homolog 6-like. (355 aa)    
Predicted Functional Partners:
smurf2
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.966
smurf1
SMAD specific E3 ubiquitin protein ligase 1.
    
 0.966
smad2
SMAD family member 2.
    
0.879
smad3
SMAD family member 3.
    
0.879
wwtr1
WW domain containing transcription regulator 1.
    
 0.858
yap1
Yes associated protein 1.
    
 0.858
smad6
SMAD family member 6.
  
  
 
0.826
smad7
SMAD family member 7.
  
  
 
0.823
smad4
SMAD family member 4.
    
0.813
LOC114646771
Mothers against decapentaplegic homolog 4-like.
    
0.813
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.