STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubcnRubicon autophagy regulator. (944 aa)    
Predicted Functional Partners:
uvrag
UV radiation resistance associated.
    
 0.995
becn1
Beclin 1.
    
 
 0.959
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.957
wdfy4
WDFY family member 4.
   
 0.860
pik3r4
Phosphoinositide-3-kinase regulatory subunit 4.
    
 
 0.816
LOC114660631
Ras-related protein rab7-like.
    
 
 0.814
rab7a
RAB7A, member RAS oncogene family.
    
 
 0.814
atg14
Autophagy related 14.
    
 
 0.657
rbsn
Rabenosyn, RAB effector.
  
  
  0.595
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
    
   0.548
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.