STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ascl4Achaete-scute family bHLH transcription factor 4. (186 aa)    
Predicted Functional Partners:
tcf4
Transcription factor 4.
    
 0.694
tcf3
Transcription factor 3.
    
 0.694
tcf12
Transcription factor 12.
    
 0.694
ldb1
LIM domain binding 1.
    
 0.595
ldb2
LIM domain binding 2.
    
 0.595
runx2
RUNX family transcription factor 2.
    
 0.445
runx1
RUNX family transcription factor 1.
    
 0.445
runx3
RUNX family transcription factor 3.
    
 0.445
uncx
UNC homeobox.
    
 0.442
gata4
GATA binding protein 4.
   
 0.428
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.