STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114651617Proteasome subunit beta type-8-like. (270 aa)    
Predicted Functional Partners:
psmb4
Proteasome 20S subunit beta 4.
   
 0.993
psmb2
Proteasome 20S subunit beta 2.
   
0.992
ubxn7
UBX domain protein 7.
    
  0.992
psmb1
Proteasome 20S subunit beta 1.
   
0.991
psmb3
Proteasome 20S subunit beta 3.
   
0.991
psma5
Proteasome 20S subunit alpha 5.
   
0.990
psmb6
Proteasome 20S subunit beta 6.
  
0.988
ENSECRP00000005387
annotation not available
   
 0.984
psma2
Proteasome 20S subunit alpha 2.
   
 0.984
psma4
Proteasome 20S subunit alpha 4.
   
 0.983
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.