STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paxip1PAX interacting protein 1. (1141 aa)    
Predicted Functional Partners:
kdm6a
Lysine demethylase 6A.
    
 0.989
kdm6b
Lysine demethylase 6B.
    
 0.987
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.970
tp53bp1
Tumor protein p53 binding protein 1.
    
 0.960
atm
ATM serine/threonine kinase.
   
 0.955
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.954
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.952
nbn
Nibrin.
    
 0.943
LOC114661656
PAXIP1-associated glutamate-rich protein 1-like.
    
 0.939
ncoa6
Nuclear receptor coactivator 6.
    
 0.937
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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