STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114654989Metastasis-associated protein MTA1-like. (699 aa)    
Predicted Functional Partners:
rbbp4
RB binding protein 4, chromatin remodeling factor.
   
 0.913
LOC114641485
Histone-binding protein RBBP7.
   
 0.913
LOC114652263
methyl-CpG-binding domain protein 2-like.
   
 0.890
mbd3
methyl-CpG binding domain protein 3.
   
 0.890
wdr73
WD repeat domain 73.
    
 0.871
ENSECRP00000016153
annotation not available
   
 0.818
hdac2
Histone deacetylase 2.
    
 0.810
hdac8
Histone deacetylase 8.
    
 0.810
hdac1
Histone deacetylase 1.
    
 0.810
hdac3
Histone deacetylase 3.
    
 0.810
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.