STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc150Coiled-coil domain containing 150. (1028 aa)    
Predicted Functional Partners:
ccdc77
Coiled-coil domain containing 77.
   
  
 0.571
gtf3c3
General transcription factor IIIC subunit 3.
      
 0.562
nemp1
Nuclear envelope integral membrane protein 1.
      
 0.560
carnmt1
Carnosine N-methyltransferase 1.
      
 0.557
gstcd
Glutathione S-transferase C-terminal domain containing.
      
 0.557
slc49a4
Solute carrier family 49 member 4.
      
 0.557
ccdc34
Coiled-coil domain containing 34.
      
 0.557
iqck
IQ motif containing K.
      
 0.556
cep85
Centrosomal protein 85.
      
 0.556
donson
Downstream neighbor of SON.
      
 0.535
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.