STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114659488Serine/threonine-protein kinase pim-3. (324 aa)    
Predicted Functional Partners:
pla2g4a
Phospholipase A2 group IVA.
    
 0.692
ripk4
Receptor interacting serine/threonine kinase 4.
    
 0.592
cask
Calcium/calmodulin dependent serine protein kinase.
   
0.575
pdzd2
PDZ domain containing 2.
    
 
 0.516
chek2
Checkpoint kinase 2.
    
0.504
nap1l1
Nucleosome assembly protein 1 like 1.
    
 
 0.499
rps27a
Ribosomal protein S27a.
    
  0.474
slc39a1
Solute carrier family 39 member 1.
    
 0.465
LOC114642544
Zinc transporter ZIP1-like.
    
 0.465
becn1
Beclin 1.
    
 0.463
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.