STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrp10LDL receptor related protein 10. (674 aa)    
Predicted Functional Partners:
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.721
ENSECRP00000022943
annotation not available
    
  0.721
reln
Reelin.
    
 0.701
lrpap1
LDL receptor related protein associated protein 1.
    
 0.697
itsn2
Intersectin 2.
    
 0.693
corin
Corin, serine peptidase.
    
0.642
agrn
Agrin.
    
 0.642
hspg2
Heparan sulfate proteoglycan 2.
    
0.639
apoe
Apolipoprotein E.
    
 0.632
sacm1l
SAC1 like phosphatidylinositide phosphatase.
    
 0.618
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.