STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114659624L-threonine ammonia-lyase-like. (326 aa)    
Predicted Functional Partners:
ube2i
Ubiquitin conjugating enzyme E2 I.
    
   0.911
LOC114664916
Probable low-specificity L-threonine aldolase 2.
  
 
 0.904
agxt
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 0.896
cth
Cystathionine gamma-lyase.
  
 
 0.891
LOC114650426
Homocysteine S-methyltransferase 1-like.
  
 0.885
cbs
Cystathionine beta-synthase.
  
 
 0.885
LOC114654879
Betaine--homocysteine S-methyltransferase 1.
  
 0.878
mtr
5-methyltetrahydrofolate-homocysteine methyltransferase.
  
 0.878
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.874
agxt2
Alanine--glyoxylate aminotransferase 2.
  
 
 0.869
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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