STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aaasAladin WD repeat nucleoporin. (515 aa)    
Predicted Functional Partners:
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
   
 0.997
nup188
Nucleoporin 188.
   
 0.989
ndc1
NDC1 transmembrane nucleoporin.
   
 0.987
nup88
Nucleoporin 88.
    
 0.982
seh1l
SEH1 like nucleoporin.
    
 0.982
nup54
Nucleoporin 54.
   
 0.981
nup107
Nucleoporin 107.
   
 0.981
nup93
Nucleoporin 93.
   
 0.981
nup35
Nucleoporin 35.
   
 0.976
nup85
Nucleoporin 85.
   
 0.974
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.