STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114646686Mitochondrial ubiquitin ligase activator of nfkb 1-A-like. (362 aa)    
Predicted Functional Partners:
usp30
Ubiquitin specific peptidase 30.
     
 0.749
tmem115
Transmembrane protein 115.
   
    0.711
ubxn7
UBX domain protein 7.
    
  0.708
tomm70
Translocase of outer mitochondrial membrane 70.
     
 0.681
tomm20
Translocase of outer mitochondrial membrane 20.
     
 0.681
rps27a
Ribosomal protein S27a.
    
  0.669
LOC114662601
Polyubiquitin-like.
    
  0.665
fkbp8
FKBP prolyl isomerase 8.
     
 0.632
LOC114662307
COMM domain-containing protein 5-like.
   
 
  0.620
tp53
Tumor protein p53.
    
   0.611
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.