STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
avl9AVL9 cell migration associated. (646 aa)    
Predicted Functional Partners:
ric1
RIC1 homolog, RAB6A GEF complex partner 1.
      
 0.580
rab30
RAB30, member RAS oncogene family.
      
 0.564
rab33b
RAB33B, member RAS oncogene family.
      
 0.561
dennd10
DENN domain containing 10.
      
 0.560
dennd11
DENN domain containing 11.
      
 0.559
rab33a
RAB33A, member RAS oncogene family.
      
 0.556
dennd6a
DENN domain containing 6A.
      
 0.556
kbtbd2
Kelch repeat and BTB domain containing 2.
      
 0.485
rab18
RAB18, member RAS oncogene family.
      
 0.474
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.