STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jph1Junctophilin 1. (672 aa)    
Predicted Functional Partners:
jph3
Junctophilin 3.
  
  
 
0.933
jph2
Junctophilin 2.
  
  
 
0.778
ENSECRP00000018730
annotation not available
  
  
 
0.776
LOC114645859
Junctophilin-4-like.
  
 
0.771
rabgef1
RAB guanine nucleotide exchange factor 1.
   
 0.690
LOC114668527
Rab5 GDP/GTP exchange factor-like.
   
 0.690
casq2
Calsequestrin 2.
   
 0.614
cacna1s
Calcium voltage-gated channel subunit alpha1 S.
   
 
 0.598
cacna1f
Calcium voltage-gated channel subunit alpha1 F.
   
 
 0.598
cacna1d
Calcium voltage-gated channel subunit alpha1 D.
   
 
 0.598
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.