STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000007855annotation not available (130 aa)    
Predicted Functional Partners:
surf4
Surfeit 4.
   
 0.809
copb1
Coatomer protein complex subunit beta 1.
   
 0.800
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.795
arfgap1
ADP ribosylation factor GTPase activating protein 1.
    
 0.738
arcn1
Archain 1.
   
 
 0.732
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.731
ykt6
YKT6 v-SNARE homolog.
   
 
 0.722
copa
Coatomer protein complex subunit alpha.
     
 0.716
copg2
Coatomer protein complex subunit gamma 2.
     
 0.710
nsf
N-ethylmaleimide sensitive factor, vesicle fusing ATPase.
   
 
 0.705
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.