STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf141Ring finger protein 141. (133 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
     
 0.750
cpsf2
Cleavage and polyadenylation specific factor 2.
   
 
  0.632
rps27a
Ribosomal protein S27a.
    
  0.626
uba5
Ubiquitin like modifier activating enzyme 5.
    
  0.493
uba3
Ubiquitin like modifier activating enzyme 3.
    
  0.493
atg7
Autophagy related 7.
    
  0.493
fech
Ferrochelatase.
   
    0.436
LOC114666002
Integrator complex subunit 9-like.
   
 
  0.426
rnf14
Ring finger protein 14.
   
 
  0.406
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.