STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdo2Tryptophan 2,3-dioxygenase. (404 aa)    
Predicted Functional Partners:
kynu
Kynureninase.
 
 
 0.992
LOC114651172
Probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein.
    
   0.990
afmid
Arylformamidase.
  
 
 0.939
LOC114653267
Indoleamine 2,3-dioxygenase 2-like.
   
 
 0.906
LOC114655162
Indoleamine 2,3-dioxygenase 2-like.
   
 
 0.906
tat
Tyrosine aminotransferase.
  
 
 0.889
mocos
Molybdenum cofactor sulfurase.
    
  0.874
tph2
Tryptophan hydroxylase 2.
  
 
 0.867
tph1
Tryptophan hydroxylase 1.
  
 
 0.867
ENSECRP00000003177
annotation not available
   
  
 0.865
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.