STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnajc5bDnaJ heat shock protein family (Hsp40) member C5 beta. (198 aa)    
Predicted Functional Partners:
tfip11
Tuftelin interacting protein 11.
    
 
 0.859
eftud2
Elongation factor Tu GTP binding domain containing 2.
  
 0.841
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.825
bag3
BCL2 associated athanogene 3.
    
 0.819
prpf19
pre-mRNA processing factor 19.
    
   0.818
bud31
BUD31 homolog.
    
   0.818
snw1
SNW domain containing 1.
    
 
 0.818
plrg1
Pleiotropic regulator 1.
    
   0.818
dnaja4
DnaJ heat shock protein family (Hsp40) member A4.
  
 
0.813
dnaja1
DnaJ heat shock protein family (Hsp40) member A1.
  
 
0.813
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.