STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
loxhd1Lipoxygenase homology domains 1. (2038 aa)    
Predicted Functional Partners:
ENSECRP00000010443
annotation not available
   
 
 0.741
slc33a1
Solute carrier family 33 member 1.
    
  0.734
ENSECRP00000011256
annotation not available
    
  0.603
slc4a11
Solute carrier family 4 member 11.
      
 0.544
bcl3
BCL3 transcription coactivator.
    
 
 0.531
ENSECRP00000000849
annotation not available
    
  0.527
slc26a5
Solute carrier family 26 member 5.
   
 
 0.523
kank4
KN motif and ankyrin repeat domains 4.
    
 
 0.513
katnal2
Katanin catalytic subunit A1 like 2.
    
 0.512
LOC114659385
Troponin C, skeletal muscle.
    
 
 0.503
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (30%) [HD]