STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114650228PHD finger protein 6-like. (308 aa)    
Predicted Functional Partners:
rbbp4
RB binding protein 4, chromatin remodeling factor.
   
 0.810
LOC114641485
Histone-binding protein RBBP7.
   
 0.810
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.803
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.801
cdyl
Chromodomain Y like.
   
 0.747
suz12
SUZ12 polycomb repressive complex 2 subunit.
   
 0.747
cdyl2
Chromodomain Y like 2.
   
 0.747
eed
Embryonic ectoderm development.
   
 0.741
mphosph8
M-phase phosphoprotein 8.
    
 0.716
kdm6a
Lysine demethylase 6A.
  
 0.707
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.