STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdfy2WD repeat and FYVE domain containing 2. (400 aa)    
Predicted Functional Partners:
cdc16
Cell division cycle 16.
   
 0.824
tex10
Testis expressed 10.
   
 0.769
LOC114662098
Transcription initiation factor TFIID subunit 9-like.
    
 0.761
anapc4
Anaphase promoting complex subunit 4.
    
 0.761
taf12
TATA-box binding protein associated factor 12.
   
 0.761
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.761
taf10
TATA-box binding protein associated factor 10.
    
 0.760
taf2
TATA-box binding protein associated factor 2.
   
 0.758
ift140
Intraflagellar transport 140.
    
 0.755
wdr19
WD repeat domain 19.
    
 0.754
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.