STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
robo1Roundabout guidance receptor 1. (1496 aa)    
Predicted Functional Partners:
ENSECRP00000008693
annotation not available
 
     
0.900
slit1
Slit guidance ligand 1.
   
 0.880
slit2
Slit guidance ligand 2.
   
 0.880
slit3
Slit guidance ligand 3.
   
 0.870
ENSECRP00000014925
annotation not available
   
 0.870
ENSECRP00000014680
annotation not available
   
 0.825
lrit3
Leucine rich repeat, Ig-like and transmembrane domains 3.
    
 0.740
lrit1
Leucine rich repeat, Ig-like and transmembrane domains 1.
    
 0.729
abl2
ABL proto-oncogene 2, non-receptor tyrosine kinase.
   
 0.714
abl1
ABL proto-oncogene 1, non-receptor tyrosine kinase.
   
 0.714
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.