STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114649579Keratin, type II cytoskeletal 8-like. (508 aa)    
Predicted Functional Partners:
bag3
BCL2 associated athanogene 3.
    
 0.978
ube2v1
Ubiquitin conjugating enzyme E2 V1.
   
 0.964
ENSECRP00000027892
annotation not available
    
 0.806
rps27a
Ribosomal protein S27a.
    
  0.672
ube2w
Ubiquitin conjugating enzyme E2 W.
    
 0.659
cct5
Chaperonin containing TCP1 subunit 5.
    
  0.654
tsc1
TSC complex subunit 1.
    
 0.649
hsp90b1
Heat shock protein 90 beta family member 1.
    
 0.649
trap1
TNF receptor associated protein 1.
    
 0.649
LOC114666696
Heat shock protein HSP 90-alpha.
    
 0.649
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.