STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114647663Bile acid receptor-like. (521 aa)    
Predicted Functional Partners:
LOC114651509
Retinoic acid receptor RXR-beta-A-like.
   
0.886
LOC114658988
Retinoic acid receptor RXR-gamma-B-like.
   
0.886
rxra
Retinoid X receptor alpha.
   
0.886
med1
Mediator complex subunit 1.
    
 0.878
ppargc1a
PPARG coactivator 1 alpha.
    
 0.872
ncoa1
Nuclear receptor coactivator 1.
    
 0.867
ncoa2
Nuclear receptor coactivator 2.
    
 0.867
ncoa3
Nuclear receptor coactivator 3.
    
 0.867
nr1d2
Nuclear receptor subfamily 1 group D member 2.
   
0.865
ENSECRP00000013617
annotation not available
    
 0.845
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.