STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fn1Fibronectin 1. (2460 aa)    
Predicted Functional Partners:
fgb
Fibrinogen beta chain.
   
 0.955
fga
Fibrinogen alpha chain.
    
 0.946
fgg
Fibrinogen gamma chain.
    
  0.942
serpinf2
Serpin family F member 2.
     
 0.932
LOC114659403
Syndecan-4-like.
     
 0.905
ENSECRP00000033258
annotation not available
     
 0.902
itgb6
Integrin subunit beta 6.
   
 
 0.879
itgb8
Integrin subunit beta 8.
   
 
 0.872
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
  
 
  0.864
itgb5
Integrin subunit beta 5.
   
 
 0.858
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.