STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114656069Probable glutamate receptor. (472 aa)    
Predicted Functional Partners:
ENSECRP00000025623
annotation not available
 
   
  0.921
scn3b
Sodium voltage-gated channel beta subunit 3.
   
 
  0.782
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
  
 
0.773
ENSECRP00000005134
annotation not available
 
  
 0.771
grin1
Glutamate ionotropic receptor NMDA type subunit 1.
   
0.763
LOC114664762
Sodium channel protein type 4 subunit alpha A-like.
     
 0.738
scn4b
Sodium voltage-gated channel beta subunit 4.
     
 0.734
grik4
Glutamate ionotropic receptor kainate type subunit 4.
  
  
 
0.728
grik5
Glutamate ionotropic receptor kainate type subunit 5.
  
  
 
0.727
porcn
Porcupine O-acyltransferase.
    
  0.548
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.