STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atp13a3ATPase 13A3. (1255 aa)    
Predicted Functional Partners:
pln
Phospholamban.
    
 0.730
ENSECRP00000001571
annotation not available
   
 
 0.683
gak
Cyclin G associated kinase.
   
 
 0.683
LOC114656119
Thioredoxin domain-containing protein 3 homolog.
   
 0.604
LOC114657276
FXYD domain-containing ion transport regulator 6-like.
    
  0.592
atp1b4
ATPase Na+/K+ transporting family member beta 4.
    
 0.578
tmem30a
Transmembrane protein 30A.
    
 0.564
LOC114650349
Cell cycle control protein 50A-like.
    
 0.564
LOC114664821
Cell cycle control protein 50A-like.
    
 0.564
ENSECRP00000008770
annotation not available
   
 0.546
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.