STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zfyve16Zinc finger FYVE-type containing 16. (1190 aa)    
Predicted Functional Partners:
LOC114644969
Zinc finger FYVE domain-containing protein 16-like.
 
      0.896
ptpn23
Protein tyrosine phosphatase non-receptor type 23.
   
   0.730
smad9
SMAD family member 9.
    
 0.643
smad1
SMAD family member 1.
    
 0.643
smad4
SMAD family member 4.
    
 0.643
LOC114646589
Mothers against decapentaplegic homolog 6-like.
    
 0.643
smad2
SMAD family member 2.
    
 0.643
smad7
SMAD family member 7.
    
 0.643
LOC114646771
Mothers against decapentaplegic homolog 4-like.
    
 0.643
LOC114660150
Mothers against decapentaplegic homolog 5.
    
 0.643
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.