STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
armc9Armadillo repeat containing 9. (791 aa)    
Predicted Functional Partners:
c1galt1c1
C1GALT1 specific chaperone 1.
    
 0.595
b3gnt4
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4.
 
   
  0.561
ENSECRP00000008399
annotation not available
      
 0.554
a3galt2
Alpha 1,3-galactosyltransferase 2.
     
 0.541
st3gal6
ST3 beta-galactoside alpha-2,3-sialyltransferase 6.
     
 0.541
b4galnt1
beta-1,4-N-acetyl-galactosaminyltransferase 1.
     
 0.540
st3gal3
ST3 beta-galactoside alpha-2,3-sialyltransferase 3.
     
 0.538
pomk
Protein O-mannose kinase.
     
 0.532
st3gal4
ST3 beta-galactoside alpha-2,3-sialyltransferase 4.
     
 0.530
rbm46
RNA binding motif protein 46.
      
 0.529
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.