STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrps16Mitochondrial ribosomal protein S16. (138 aa)    
Predicted Functional Partners:
mrps35
Mitochondrial ribosomal protein S35.
   
 0.999
mrpl9
Mitochondrial ribosomal protein L9.
  
 
 0.999
mrps9
Mitochondrial ribosomal protein S9.
  
 0.999
mrps10
Mitochondrial ribosomal protein S10.
  
 0.999
rps3
Ribosomal protein S3.
  
 0.999
ENSECRP00000003092
annotation not available
  
 
 0.999
mrps12
Mitochondrial ribosomal protein S12.
  
 0.999
mrps6
Mitochondrial ribosomal protein S6.
  
 0.999
dap3
Death associated protein 3.
   
 0.999
mrpl21
Mitochondrial ribosomal protein L21.
  
 
 0.999
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.