STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fastkd2FAST kinase domains 2. (641 aa)    
Predicted Functional Partners:
ngrn
Neugrin, neurite outgrowth associated.
    
 
 0.848
mterf3
Mitochondrial transcription termination factor 3.
   
 
 0.811
trub2
TruB pseudouridine synthase family member 2.
   
 
 0.799
ddx28
DEAD-box helicase 28.
   
 
 0.780
LOC114661209
Pentatricopeptide repeat-containing protein 1, mitochondrial-like.
    
 
 0.766
ddx47
DEAD-box helicase 47.
   
 
 0.669
fastkd3
FAST kinase domains 3.
   
 
0.635
mterf2
Mitochondrial transcription termination factor 2.
   
 
 0.618
mterf1
Mitochondrial transcription termination factor 1.
   
 
 0.618
rpusd4
RNA pseudouridine synthase D4.
   
 
 0.613
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.