STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nufip2Nuclear FMR1 interacting protein 2. (647 aa)    
Predicted Functional Partners:
dhx9
DExH-box helicase 9.
     
 0.938
rpl8
Ribosomal protein L8.
    
  0.936
rpl19
Ribosomal protein L19.
    
  0.913
rpl11
Ribosomal protein L11.
    
  0.907
trip12
Thyroid hormone receptor interactor 12.
   
    0.853
atxn2l
Ataxin 2 like.
    
 
 0.822
mrpl2
Mitochondrial ribosomal protein L2.
    
  0.788
larp4b
La ribonucleoprotein 4B.
   
 
 0.782
larp4
La ribonucleoprotein 4.
   
 
 0.782
abcf1
ATP binding cassette subfamily F member 1.
     
 0.780
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.