STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
park7Parkinsonism associated deglycase. (189 aa)    
Predicted Functional Partners:
ube2v1
Ubiquitin conjugating enzyme E2 V1.
   
 
  0.979
ENSECRP00000004147
annotation not available
  
 0.978
sod1
Superoxide dismutase 1.
  
 0.978
cat
Catalase.
  
 0.968
sod2
Superoxide dismutase 2.
  
 
 0.948
glo1
Glyoxalase I.
  
 
 0.931
glod4
Glyoxalase domain containing 4.
  
 
 0.925
daxx
Death domain associated protein.
    
 0.910
mcee
methylmalonyl-CoA epimerase.
  
 
 0.909
ENSECRP00000030629
annotation not available
    
 0.904
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.