STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc86Coiled-coil domain containing 86. (324 aa)    
Predicted Functional Partners:
mrto4
MRT4 homolog, ribosome maturation factor.
   
   0.829
nip7
Nucleolar pre-rRNA processing protein NIP7.
   
    0.739
nhp2
NHP2 ribonucleoprotein.
   
    0.686
nsa2
NSA2 ribosome biogenesis factor.
   
   0.653
grwd1
Glutamate rich WD repeat containing 1.
   
    0.638
lyar
Ly1 antibody reactive.
   
  
 0.480
rplp0
Ribosomal protein lateral stalk subunit P0.
   
   0.462
ufsp2
UFM1 specific peptidase 2.
      
 0.452
LOC114652831
DNA-directed RNA polymerases I and III subunit RPAC2-like.
   
    0.430
ENSECRP00000024904
annotation not available
   
    0.430
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.