STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudt21Nudix hydrolase 21. (227 aa)    
Predicted Functional Partners:
cpsf6
Cleavage and polyadenylation specific factor 6.
   
 0.999
zc3h3
Zinc finger CCCH-type containing 3.
    
 0.988
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.980
cstf2
Cleavage stimulation factor subunit 2.
   
 0.977
fip1l1
Factor interacting with PAPOLA and CPSF1.
   
 0.974
LOC114662399
pre-mRNA 3'-end-processing factor FIP1-like.
   
 0.974
cpsf2
Cleavage and polyadenylation specific factor 2.
   
 
 0.972
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 
 0.971
sympk
Symplekin.
     
 0.970
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.970
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.