STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iba57Iron-sulfur cluster assembly factor IBA57. (346 aa)    
Predicted Functional Partners:
shmt2
Serine hydroxymethyltransferase 2.
    
 0.918
shmt1
Serine hydroxymethyltransferase 1.
    
 0.918
gcsh
Glycine cleavage system protein H.
     
 0.915
dhfr
Dihydrofolate reductase.
  
 
 0.906
LOC114662478
Dihydrofolate reductase-like.
  
 
 0.905
gldc
Glycine decarboxylase.
     
 0.889
mthfd2
annotation not available
     
 0.886
LOC114642285
Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like.
     
 0.886
amt
Aminomethyltransferase.
     
 0.864
tyms
Thymidylate synthetase.
    
  0.863
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.