STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbr1T-box brain transcription factor 1. (678 aa)    
Predicted Functional Partners:
pax6
Paired box 6.
    
 
 0.650
snai2
Snail family transcriptional repressor 2.
    
 0.596
LOC114650313
T-box transcription factor TBX19-like.
   
 
0.588
LOC114664867
T-box transcription factor T-A-like.
   
 
0.588
tbxt
T-box transcription factor T.
   
 
0.588
foxh1
Forkhead box H1.
     
 0.585
egr3
Early growth response 3.
   
 
 0.584
tbx21
T-box transcription factor 21.
   
 
 
0.580
smad2
SMAD family member 2.
   
 0.579
smad3
SMAD family member 3.
   
 0.579
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.