STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc7a5Solute carrier family 7 member 5. (510 aa)    
Predicted Functional Partners:
LOC114647153
Neutral and basic amino acid transport protein rBAT-like.
  
 0.921
LOC114654044
4F2 cell-surface antigen heavy chain-like.
  
 0.921
slc3a2
Solute carrier family 3 member 2.
  
 0.921
slc3a1
Solute carrier family 3 member 1.
  
 0.714
LOC114662354
Uncharacterized LOC114662354.
   
 0.667
alkbh3
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase.
   
 0.623
kiaa0513
KIAA0513 ortholog.
   
 0.623
alkbh2
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
   
 0.623
nudt12
Nudix hydrolase 12.
   
  0.616
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.561
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.